a python-based programming language for high-performance computational genomics

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Seq

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  • Is there a high-performance biology programming language?

  • Here, we introduce Seq (Fig. 1a ), a high-performance, Python-based, compiled programming language geared toward biology that combines the ease of use of high-level languages like Python or Matlab with the runtime performance of low-level languages like C or C++.

  • What programming language should I use for Bioinformatics?

  • We chose Python as a base language due to its succinct, clear syntax and widespread adoption; it is one of the most commonly used languages in bioinformatics, and in programming in general11. Moreover, Seq鈥檚 first-class support for C and Python interoperability makes it easy to integrate into existing pipelines.

  • Why did we choose Python as a base language?

  • We chose Python as a base language because of its succinct, clear syntax and widespread adoption; it is one of the most commonly used languages in bioinformatics, as well as in programming in general 11. Moreover, Seq鈥檚 first-class support for C and Python interoperability makes it easy to integrate into existing pipelines.

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